Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs72275134 chr16:67954886 TAAAA/T 9.45E-6 295 20.73 28.7 17.15 KM Plot
CESC rs723191 chr10:81707920 A/G 7.86E-9 298 24.9 16.47 2.62 KM Plot
CESC rs723193 chr10:81708155 G/T 7.86E-9 298 24.9 16.47 2.62 KM Plot
CESC rs72478223 chr10:585095 C/T 7.33E-6 298 21.17 27.63 7.57 KM Plot
CESC rs72676714 chr1:59088019 G/A 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs72676715 chr1:59088054 T/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs72690609 chr9:1442927 G/A 8.15E-10 291 21.17 21.2 0.47 KM Plot
CESC rs72773906 chr5:96092274 C/G 1.36E-5 296 21.17 24.53 5.1 KM Plot
CESC rs72773922 chr5:96116660 A/G 1.06E-5 296 21.4 24.17 5.1 KM Plot
CESC rs72773923 chr5:96117579 G/A 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs72773924 chr5:96117712 A/C 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs72773932 chr5:96118148 T/C 1.23E-6 297 21.4 24.17 6.73 KM Plot
CESC rs72773942 chr5:96123366 G/A 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs72773947 chr5:96125533 T/A 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs72780207 chr5:126148342 C/T 0 298 21.57 20.63 1.73 KM Plot